• Semantic Web Service provision...

Treffer: Semantic Web Service provision: a realistic framework for Bioinformatics programmers.

Title:
Semantic Web Service provision: a realistic framework for Bioinformatics programmers.
Authors:
Gordon PM; University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics, Calgary, AB, Canada. gordonp@ucalgary.ca, Trinh Q, Sensen CW
Source:
Bioinformatics (Oxford, England) [Bioinformatics] 2007 May 01; Vol. 23 (9), pp. 1178-80. Date of Electronic Publication: 2007 Mar 24.
Publication Type:
Journal Article; Research Support, Non-U.S. Gov't
Language:
English
Journal Info:
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
Imprint Name(s):
Original Publication: Oxford : Oxford University Press, c1998-
MeSH Terms:
Databases, Genetic* , Internet* , Natural Language Processing* , Programming Languages* , Software*, Computational Biology/*methods , Information Storage and Retrieval/*methods, Database Management Systems ; Semantics ; User-Computer Interface
Entry Date(s):
Date Created: 20070327 Date Completed: 20070605 Latest Revision: 20130520
Update Code:
20250114
DOI:
10.1093/bioinformatics/btm060
PMID:
17384428
Database:
MEDLINE

Weitere Informationen

Unlabelled: Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S.
Availability: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/.