Treffer: OntologyTraverser: an R package for GO analysis.
Title:
OntologyTraverser: an R package for GO analysis.
Authors:
Young A; Baylor College of Medicine, Department of Molecular and Human Genetics Houston, TX, USA., Whitehouse N, Cho J, Shaw C
Source:
Bioinformatics (Oxford, England) [Bioinformatics] 2005 Jan 15; Vol. 21 (2), pp. 275-6. Date of Electronic Publication: 2004 Aug 27.
Publication Type:
Journal Article; Research Support, U.S. Gov't, P.H.S.
Language:
English
Journal Info:
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Print ISSN: 1367-4803 (Print) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
Imprint Name(s):
Original Publication: Oxford : Oxford University Press, c1998-
MeSH Terms:
Grant Information:
U01 DK63588-01 United States DK NIDDK NIH HHS
Substance Nomenclature:
0 (Proteins)
Entry Date(s):
Date Created: 20040831 Date Completed: 20050308 Latest Revision: 20130520
Update Code:
20250114
DOI:
10.1093/bioinformatics/bth495
PMID:
15333457
Database:
MEDLINE
Weitere Informationen
Unlabelled: Gene Ontology (GO) annotations have become a major tool for analysis of genome-scale experiments. We have created OntologyTraverser--an R package for GO analysis of gene lists. Our system is a major advance over previous work because (1) the system can be installed as an R package, (2) the system uses Java to instantiate the GO structure and the SJava system to integrate R and Java and (3) the system is also deployed as a publicly available web tool.
Availability: Our software is academically available through http://franklin.imgen.bcm.tmc.edu/OntologyTraverser/. Both the R package and the web tool are accessible.
Contact: cashaw@bcm.tmc.edu